Sunday, 17 September 2017

Pseudoscience on Social Media

Some examples of Pseudoscience on Social Media.

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Via Twitter

US Senator Jim Inhofe sets what may be the gold standard for denialism, back in Feb 2015.

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Via Twitter

The above was Tweeted by East Mids UKIP MEP @RogerHelmer.

Snopes has looked into this article, which originated on Breitbart News, and comments that :

"We reached out to many of the authors of the studies included on this list via email to see if they agreed with Breitbart and No Tricks Zone’s analysis. While not everyone we reached out to responded, not a single researcher that we spoke to agreed with Breitbart’s assessment, and most were shocked when we told them that their work was presented as evidence for that claim."

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Via Facebook

(Post first seen by NSB in 2017).A Facebook post poking fun at pseudoscience conspiracy theories.

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(Post first seen by NSB in 2017.). Does Fluoridation cause cancer? Answer is that there are so few of the most likely cancers (even before fluoridation) that it is difficult to tell. More information in this article by the American Cancer Society.

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Cannabis does not cure cancers
"Dangerous pseudo-science that could get people killed if they use cannabis oil instead of medical advice. In contrast to the claims in the article, there are MANY studies on the effects of cannabisits effects - for example at CancerResearchUK page".

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Anti-Vaccine attitudes get children killed.

This post actively causes harm by discouraging people from getting their children vaccinated. If you want to see what DOCTORS say about flu vaccine, visit this CDC page.

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CERN is not making an anti-matter bomb

Very sensible video until about 6mins in then it starts to fixate on anti-matter, repeatedly saying (accurately) that 1g of antimatter has the energy potential of a nuclear weapon and (also accurately) that CERN has been trying to contain antimatter.

But what is not mentioned (although NSB did not listed to the entire audio) is that the current state of the art is only able to hold about 40 anti-protons, which is 0.000 000 000 000 000 000 000 000 1 g and according to the IOP it would take around 100 billion years to produce 1 gram of antimatter. ********************************

Microwaves are not particles

Lots of errors and misinformation here. To take one example,the article says "They use electrically generated electromagnetic energy to make super-fast particles". But microwaves aren't particles. The clue is in the name. Here is a paper that talks quite comprehensively about microwave oven leakage and safety

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Sunday, 9 July 2017

Talk : Adventures in the Goldilocks Zone – The Search for Other Earths

For May’s Public Lecture Series talk, Professor Frazer Pearce joins us to discuss "Adventures in the Goldilocks Zone – The Search for Other Earths". @Gav Squires was there and has kindly written this guest post summarising the event, with some linkage added by NSB.

Jupiter is around a tenth the radius of the Sun. Earth is around a tenth the size of Jupiter. Jupiter is a thousandth the mass of our star while we are three hundredths the mass of Jupiter. An Astronomical Unit (AU) is the distance from the Earth to the Sun. Jupiter is 4 AU away from us and the solar system is around 50 AU in total.

Solar System Size Comparison

Eight billion years ago the Sun hadn't yet formed, it was a protostar. Close to the star, metals and minerals can condense into planets. As you get further out, you reach the "frost line" . Outside of this, low temperatures allow condensing planets to include things such as H2O, NH3 and CH4. The size of the star determines how far away this frost line is.

Prof Pearce, derived some of the key equations that describe how a planets orbit is related to its mass and speed, these are shown in the image below.
Equations

So if energy is added, the planet will move out from the star.

When the Millennium Bridge was built in London, it initially had problems with it swinging in sync with people who were walking across it. This is resonance. It is the reason that soldiers have to break step whenever they cross a bridge.

In our solar system, we can see that close to the Sun there were lots of rocky fragments, then out at the frost line Jupiter formed. After around 70,000 years, Jupiter started to migrate in towards the Sun, getting as close as 1.5AU. Saturn followed it and as it caught up, the two planets became locked in a resonant frequency. This prevented them from migrating in any further. When Jupiter was around 300,000 years old, it started to migrate outward from the Sun and reached its current position around 200,000 years later, thus ending the so called "Great Tack".

This explains a lot about the solar system including why we have so much water here on Earth - Jupiter had brought a lot of the frozen water from around the frost line with it. However, while it may feel like there is a lot of water on Earth, if you balled it all up, it would comfortably fit inside the US. There is still more water than would be expected though. Most comes from Jupiter but there is also some that came from comet bombardment. The grand tack is also the reason that Mars is so small. Mars is only 10% the mass of Earth but Jupiter gobbled up a lot of the stuff that should have been Mars.

Earth- Mars Size Comparison

There are two ways to look for an exo-planet. Firstly you can look for its transit - when the planet passes between a star and us. This will block out some of the light from the start. From this we can measure the period of the planet's orbit and so we can use Kepler's 3rd law, it's possible to work out how far away from the star the planet is. Then it's possible to work out the size of the planet by measuring how much light is blocked. The second way is through radial velocity variation. The planet and the star both orbit the centre of mass of the system. This means that the planet will cause the star to have a slight "wobble". This can be measured using the Doppler Effect. The bigger the planet, the more the star moves. Using these two methods together, you can work out the density of the planet, which tells us whether it is a rocky planet or not.

Kepler6B photometry - showing light from star being blocked as planet passes in front

Bigger stars are better. There is a region around a star where water exists in a liquid state. Too near to the star and it boils off. Too far away and it freezes. This is known as the Goldilock's zone as it's not too hot, not too cold, but just right. The larger the star, the further away the Goldilock's zone will be. If a planet if 1 AU away from a small star, that would be no good as its water would be frozen.

The TRAPPIST-1 system, 40 light years away, contains 7 Earth-like planets. The star at the heart of the system is a red dwarf and is just a tenth the size of the Sun. The outermost planet is around 0.06 AU from the star and three of them are within the habitable zone. One could even potentially be a similar temperature to Earth. However, large flares from the star make life on the planets highly unlikely. The inner planets are tidally locked, like our moon, meaning that the same side always faces the star. In many ways the system is comparable to Jupiter and its moons. The planets of the TRAPPIST system are all in resonance - the inner most one orbits 12 times for each orbit of the outermost one.

Artist Impression of TRAPPIST -1 System

There are planets everywhere! Around 15% of systems contain Earth-like planets, 20% contain super-Earths and 20% contain mini-Neptunes. The next few years will see more missions launched [for example, TESS and CHEOPS] with the aim of discovering more exo-planets and specifically more Earth-like worlds. Earth itself would be too small to detect using its transit as it is too small to block out enough light. However, future detection techniques will allow the discovery of more planets similar to ours.

Professor Frazer Pearce


Related Content:
Fee- An Autobiography
Curiosity, Twitter and the British Connection
Interview with Prof Aragon-Salamanca
Interview with Prof Chris Lintott
Some background to the Space Shuttle
Lecture by Chris Lintott on 2011 Astronomy highlights

Image Sources:
Planets, Earth-Mars comparison, Kepler6b Transiting light level, TRAPPIST-1 system

Talk : Arachnoglobia - what makes a spider fly?

For April's Cafe Sci talk, Dr Sara Goodacre, who is an Assistant Professor at the Faculty of Medicine & Health Sciences at the University of Nottingham (and runs the UoN Spider Lab) gave a talk entitled "Arachnoglobia - what makes a spider fly?"

@Gav Squires was there and has kindly written this guest post summarising the event, with some linkage added by NSB.

Spiders eat pests. If we could work out how to control their populations then we could end up with a more environmentally friendly world.

The spider family is 400million years old. Spiders have adapted to their world in many ways. Why, and how do these difference help the spider to adapt? In a single species of spider, why does more than type persist? The adaptations that they have are all relative to each other. Even in a single species, different morphs can exist in different parts of the world. To our eyes these morphs look different but they can appear as different again under UV light. In fact, Crab spiders pretend to be nectar to catch bees. This effect can only be seen in UV but it works because bees see in UV.

Crab Spider about to spoil a bees day

In some cases, spiders are finding the same solutions to survival - some can have the same shape for a completely different genus. Co-operation can also solve some problems. Some spiders live in groups and they live in perfect harmony with each other. We've seen this in 9 species of spider, which is impressive but there are 40,000 types of spiders in the world. Those that do live in close family groups end up inbreeding. However, after 9-10million years of this, there appear to be no adverse effects. There is also a huge female bias when it comes to spiders in group living conditions.

Social Spiders

Being able to move long distances also helps. Lingphiids are common in disturbed, agricultural environments. Many are capable of dispersing long distances by spinning out a line of silk and using it to take off. This is how they can end up on a farmer's field even after they have sprayed pesticide. You can find around 100 spiders in the space the size of an average table and they eat 25 times their body weight in pests every week. Spiders are 1000 times more impacted by insecticide than whatever you're trying to kill. How many of these flying spiders carry resistance to pesticides with them?

At any time, 40-60% of spiders will attempt to take off. This achieves optimum balance between rates of extinction and recolonization. After a new island emerges from the sea, spiders are often the first animals on it and birds in places like Svalbard partially rely on flying spiders arriving as a source of food. Prior to take-off, 1.5m of silky sail is spun out. The spider cannot control how high they go or where they end up. Spiders can't propel their silk out, it has to be reeled out instead. Most species of spider eventually get too big to be able to fly. Money spiders can fly throughout their lives though. Spiders can fly up to 70km in just 10 hours.

Why is dispersal so important? Professor Godfrey Hewitt said "Global climate has fluctuated greatly during the past three million years, leading to the recent major ices ages. An inescapable consequence for most living organisms is great changes in their distribution. Such range changes can be expected to have genetic consequences."

Single filament of synthetic spider silk
What drives the different dispersal strategies? What is the relationship between dispersal, gene flow and local adaptation?

Risk avoidance on the part of the spider is not the only factor determining when it flies. It has been discovered that spiders carry particular bacterial infections that are known to influence the biology of other hosts. For example, in butterflies, this Wolbachia bacteria results in a female biased sex ratio, meaning that the females have to compete for males. In woodlice, genetic males develop as females but other males prefer real females over feminised males. In other creatures, infected females aggregate offspring, thereby promoting sibling mating and inbreeding. The bacteria affects higher brain function.

Example of Spider Adaptations

How can we determine the effects of bacterial infection in spiders? We can cure the spiders with antibiotics and then see what happens to the behaviour of the "cured" spiders. Of course this isn't as straightforward as it sounds - what is the right dose of antibiotic for something as small as a spider? It turns out that spiders are more likely to fly if they have been cured. So, the bacteria see to influence whether or not a spider will fly. Around 2/3 of invertebrate creepy crawlies have this bacteria.

Spiders that can fly are also good sailors. This is how they can travel much further than we initially thought. Some spiders can even stand on water. These are a subset of the sailors, who are a subset of the flyers. The spiders that can fly but can't sail might be in trouble if they land on water. There are even some spiders that can survive submerged for up to a week. However, many spiders can drown in a raindrop.

Spider Distribution Map at BAS

We then move onto a slightly more general chat about spiders. There are very few spiders that are actually dangerous to humans. There is Brazilian wandering spider that uses neurotoxin but most spiders don't have that kind of venom. Very few cases globally of a long term harm from a Sydney funnel web. There have only been two reports of "Fake Widow" attacks, despite all the coverage that they have received in the press. One was a sore arm for an afternoon in Worthing in 1991. One was a sore leg in south France in 2003. However, you are still better not touching spiders abroad but there are no harmful spiders in the UK.

Many people think that conkers can be used to keep spiders away but they do nothing. If anything a spider just sees a conker as something else to hide under. Most spiders can mate twice in quick succession. Sometimes a male spider is half-eaten, mates again and then she eats the rest of him. The hairs on a spider's foot that let it climb glass are thinner than a human chromosome.

In conclusion, natural selection shapes traits such as ability to survive encounters with water and aerial dispersal tendency. A small proportion of individuals is capable of moving over distances far greater than previously imagined because aerial dispersers are able to survive encounters with water.

Dr Sara Goodacre

Café Sci returns to The Vat & Fiddle after its summer hiatus on the 9th of October where Mike Merrifield will talk about Exoplanets. For more information, check out the Café Sci MeetUp site: https://www.meetup.com/nottingham-culture-cafe-sci/

Image Sources
Crab Spider, Social Spider, Spider silk comparison, Silk strand

Monday, 29 May 2017

Talk : When the Uncertainty Principle Goes up to 11

For April's Uni of Nottingham Public Science Lecture, Professor Philip Moriarty from the School of Physics & Astronomy at the University Nottingham talked about "When the Uncertainty Principle Goes up to 11".

@Gav Squires was there and has kindly written this guest post summarising the event, with some linkage added by NSB.

There is a deep and fundamental link between quantum physics and heavy metal. This is a real thing unlike the huge industry that people like Deepak Chopra have built up around quantum woo, trying to link eastern mysticism and quantum physics. Despite what Deepak and his ilk will have you believe, we actually understand quantum physics remarkably well - it is a theory of waves. We don't know what those waves mean yet but we can do the mathematics behind them. At the minute, there are around twenty interpretations of quantum mechanics. As Richard Feynman said, "if you think you understand quantum mechanics, you don’t".

Metal Bands and Physics

Heavy metal is not considered to be the most cerebral of genres but there are a number of bands that are embedding science themes in their music. David Robert Grimes, from Oxford University, has written a paper on string-bending and there is also a published paper entitled, "Collective Motion of Humans in Mosh and Circle Pits at Heavy Metal Concerts" (it turns out that the people behave in exactly the same way as molecules in a box) So, scientists are already writing about the physics of music. Mathematician Gottfried Wilhem von Leibniz (1646-1716) even said, "music is the pleasure that the human mind experiences from counting without being aware that it is counting" There is an equivalence between fractions and musical notation such as quavers, semi-quavers etc. Musical theory is based around the concept of intervals - thirds, fourths, fifths, octaves. Music has notations and maths has notation and we can simplify both of them.

Moriarty playing the guitar

We can use our knowledge of waves in the real world to tell us about the quantum world. If we confine a particle to a finite space it will have a wave like characteristic. This is similar to a guitar string. What happens when a wave can't propagate? It reflects. With two nodes, you get very simple waves where it doesn't vibrate rather than the mess that you might expect. A low note has a low wavelength, while a high note has a higher pitch and a higher rate of oscillation.

Why does an "E" on piano sound nothing like an "E" on guitar? It's the harmonics. If every wave produced just looked like a standard sine wave you wouldn't be able to tell the difference between different instruments. The real waves are much more complex, even though they are still regular and repeating. Whistling is a lot more similar to a "standard" sine wave.

Different Harmonics possible with a single string

How a harmonic may oscillate

The amplitude is the period of a wave, how many times it repeats per second. The frequency can be represented as 1/T, where T is the amplitude. This is "reciprocal time" - converting from one quantity to its reciprocal is incredibly important in physics. The frequency will change with the pitch. On a guitar, there are multiple spikes even with just one note, so we know we have a range of frequencies.

You can get any pattern that is relevant in the real world by adding together different sine waves. As Jean Baptiste Joseph Fourier said, "mathematics compares the most diverse phenomena and discovers the secret analogies that unite them." The guitar string can vibrate in a number of ways. However, we always know that it has two nodes. By adding your finger to the string at a node, you can dampen out any waves (harmonics) that don't have a node at that point.

With particles and waves, you're looking at localised versus delocalised. When an electron moves on silver you get standing waves, just like with guitars. These days it is child's play to manipulate individual atoms on a surface, you can just point and click. Electrons create waves but rather than these being actual waves, they are probability waves, all to do with the probability that you will find an electron. If you create a string of iron atoms and then look at the distribution of the electrons then you can see that the same ideas that we have on a guitar string can be ported down to this level.

Electron Waves 

Heisenberg's Uncertainty Principle has been incredibly mis-interpreted throughout the years, not least by Heisenberg himself. You could say he was uncertain of how it worked! It is different from the observer effect, where if you interact with a system then you change the evolution of the system. Anything can be an observer - in the famous case of Schrödinger's Cat, even the box is an observer, so the cat has been observed long before you actually open the box. We see the Uncertainty Principle all the time in the real world.

For example, when you mute a guitar string with your palm. If you look at the peak for the fundamental - the lowest frequency peak, it is wide in time but narrow in frequency. By muting the string with your palm, you get narrow in time but wide in frequency. This comes from classical physics but it is the Uncertainty principle.

You can also have a spatial frequency - number of stripes per metre. Then you look at the reciprocal space - how often does it repeat? This ties back in with momentum in the Uncertainty Principle. High definition means high spatial frequencies, while a narrow spectrum gives much greater uncertainty in space.

The Public Lecture Series returns on May the 18th where Professor Frazer Pearce will be talking about Adventures In The Goldilocks' Zone - The Search For Other Earths. For more information visit the website: www.nottingham.ac.uk/physics/outreach/science-public-lectures.aspx

Image Sources
Standing Waves, Others by Gav Squires.

Sunday, 30 April 2017

Newark Air Museum

Visited Newark Air Museum with Mrs NSB and No3 Son to take advantage of BBC East Midlands "Big Day Out" event.

Well worth visiting, we all got to sit inside the (cramped) cockpit of an Avro Vulcan, and No3 Son also got to sit in a Canberra cockpit. Volunteers who explained about the planes really added a lot of value to the Museum and are not something NSB has seen similarly elsewhere.

A few pictures...

NSB's words on seeing this Bristol Hercules ; "Look at that engine, Phwoar!"

The Fairy Gannet - A reason for mandatory drug testing of aircraft designers?

Effortlessly beautiful Hawker Hunter 

Spats on this Mig-27 make it look like a Transformer!

Unexpectedly curvy Viggen fuselage

Yellow Sun nuclear bomb. Equivalent to 26 Hiroshimas.
Frightening times

Tuesday, 25 April 2017

Talk : Food Allergies: What Are They? Why Do We Have Them?

For April's Cafe Sci, Dr Marcos Alcocer from the School of Biosciences at the University Nottingham comes to talk about Food Allergies: What Are They? Why Do We Have Them?. @Gav Squires was there and has kindly written this guest post summarising the event, with some linkage added by NSB.

With the end of our own vegetable gardens, in our industrialised world, not everything is under our control any more. These days, wherever you go, it's almost a "fashion" to have a good allergy. These adverse reactions to food can range from dizziness, itching, vomiting to diarrhoea. Non-toxic reactions to food can include the enzymatic (e.g. intolerance to lactose, alcohol, galactosemia) or pharmacological (e.g. intolerance to caffeine, acids, tyramine alkaloids, histamine, monosodium glutamate, salicylates or benzoates).

Histamine

Food hypersensitivity can also be immune related and can kill you, unlike something like lactose intolerance, which is just upsetting and painful. Food allergy is immunity going wrong, it recognises things in food as being toxic. In our gut, we have a "sampling device" and everything that we eat is sampled and checked with the immune system. In most of the cases the immune system doesn't respond but if it sees a problem then it activates.

The first time that you encounter an allergen, your body will produce antibodies. For example, for peanuts it will recognise one of the proteins in the peanuts. Cells will now be loaded with antibodies and when these recognise future instances of that allergen, histamines are released. Amongst other things, Histamine causes dilation of blood vessels (reducing blood pressure) and bronchial tubes (which results in difficulty in breathing). In extreme cases this can result in anaphylactic shock.

Structure of an allergy antibody 

It is impossible for your GP to tell you what you are actually allergic to just from your symptoms as they bear no relation to the food that actually caused them. The first paper on food allergies was only published relatively recently - we are only just starting to make the connections. So, while they seem to be a modern fad, they have always been around but people didn't realise what they were.

There were 37 fatalities in the UK between 1992 and 1998:

Peanut - 10
Nuts - 10
Walnut - 5
Uncertain - 4
Seafood - 3
Milk - 2
Chickpea - 1
Nectarine - 1
Banana - 1

We also have the breakdown of where they ate the food that killed them:

Restaurant/Bar - 13
Take-away - 6
Home - 6
Other - 5
Canteen - 3
School - 2
Party food - 2

Roasted Peanuts

Is the prevalence increasing? Yes, it is, but there are problems with the data acquisition. Between 0 and 4 years old, there is a massive incidence of food allergy but most people grow out of it. So, should mothers avoid eating foods that contain allergens while pregnant or while breast feeding? Should parents delay feeding solid food? We don't know. However, there does appear to be one very clear, three-month window between 3 and 6 months in which to make children tolerant.

Atopy, which is inherited hypersensitivity, is increasing. One of the more popular hypothesises about why this is happening is the hygiene hypothesis - the cleaner that you are the more at risk you are. The theory being that too much cleaning can create an immune system that is not used to real life. For example, studies were done in East and West Germany when they were still separate counties. In clean, modern West Germany, atopy rates were 37%, whereas in East Germany they were just 17%.

However, there are other risk factors, such as geography/environment and genetics. For example, Jewish children in the UK were 10 times more likely to suffer from food allergies than those from the same family when they were still in Israel.

There is also a hypothesis that looks at gut microbiotica. Variety of species in the gut is a good indicator of gut health - the more, the better. Allergens react to the bacteria in the gut. We can test this hypothesis by transferring faeces from one animal to another.

Gut Bacteria

What makes an allergen is not well defined - why is one protein an allergen and another not? For example in a Brazil nut, there is one protein that causes a reaction but in a peanut, it can be one of 16.

In the last 10 years, technology advances have allowed us to sequence everything. We can sequence peanut proteins and so we can tell if people will cross-react. Scandinavians and Southern Europeans are both often allergic to apples. However, it is a different protein that causes the reaction. Scandinavians actually get their allergy from Birch trees, which contain the a protein that is also found in apples. The problem with sampling is the time that it takes. A human has around 100,000 proteins but wheat is eight times more complex.

Despite, all of the research, we don't have a cure yet. The only treatment is an adrenaline shot, that will keep you alive for enough time to get to the hospital.

Café Sci returns to The Vat & Fiddle on the 8th of May at 8:00 where Sara Goodacre will talk on Arachnoglobia: Long Journeys by 8-Legged Travellers & Other Stories. For more information, check out the Café Sci MeetUp page - https://www.meetup.com/nottingham-culture-cafe-sci/


Histamine, Antibody, Gut Bacteria

Sunday, 2 April 2017

Talk - Bits And Bytes - When Horses Meet Computers

For March's University of Nottingham Public Lecture Series talk, Dr Mandy Roshier, from the School of Veterinary Medicine and Science, and Dr Steve North, from the School of Computer Science, join forces to talk about Bits And Bytes - When Horses Meet Computers. @Gav Squires was there and has kindly written this guest post summarising the event, with some linkage added by NSB.

Mandy and Steve are looking at how horses feel and what they want, using computers to measure their behaviour in an objective manner so that we can improve our understanding and the horses' welfare.

The research has focused on animal-computer interaction. Animals have interacted with our technology throughout human history and they now interact with our computer-based systems, whether they know it or not. The lack of an animal perspective on system design can have a negative effect on both animal users and the purpose for which the technology was developed. Animal-computer interaction is a recent field of study and is still very small.

Prehistoric and more recent attempts at depicting horse motion

However, horses have been interacting with our technology for a long time. Before 4000BCE, horses were only used as food for humans. Then between 4000-3000BCE, humans started to use horses for traction and transport. While we still ate horses during this period, this was the beginning of horses having to interact with our technology. These were "hard" technologies, the saddle, bridle, reigns, bit, halter, whip, working collar, harness, chariot, cart and plough. Then there was the most significant development - the "hot shod" horse shoe. As the horse enable humans to travel great distances, trade, carry cargo and share culture and language, it could be argued that the horse was a primary driver of human technological development.

Horse-computer interaction can include environmental, physical training, health and sport performance analysis and more general health such as pregnancy monitors and web cams. Some of these techniques can be invasive. However, touch screen computers are changing the way that scientists carry out equine research as they can take out the risk of human influence in equine decision making and actions. There is also the Aktiv stable, which controls a horse's environment. Microchips attached to the horse control feeding, watering and social interaction between horses. There are benefits to the horse in that it allows a more natural lifestyle but it reduces human interaction.

How do horses respond to their environment? How does this differ between sports horses, those just kept in regular stables and feral horses? (there are no such thing as wild horses, only feral) Behaviour is a part of welfare, although it is one that vets can often overlook in favour of the physiological side of animal care. In the 70s, the Animal Welfare Council came up with their five freedoms, which included a reference to behaviour:

* Freedom from hunger and thirst
* Freedom from discomfort
* Freedom from pain, injury and disease
* Freedom to express normal behaviour
* Freedom from fear and distress

Animal research can include psychology (the study of the mind), ethology (the study of behaviour) and physiology (for example measuring something like cortisol levels) The physiology and the ethology need to be considered together so that you can tell whether a rise in cortisol levels is due to increased stress or increased excitement for example. Within these three areas, you can record observable actions and interpret them. Computers help here as they can cope with large levels of data. This has led to research such as EquiFACS, which looks at equine anatomy by recording minute movements of muscle. This initially started by looking at humans but has moved on to other animals. Similarly, the Horse Grimace Scale was born from research that started with rodents but now looks at a way of measuring how much pain a horse is in. Meanwhile equine motion has fascinated us for years, from the earliest cave paintings to the present day.

Previously, there have only been cumbersome way of analysing horse motion

Following behaviour is when horses follow each other in a group. There are a number of instances of this:

* Following as reproductive behaviour between a mare and a foal, parenting, early development
* Following as intermale interaction
* Trek as maintenance behaviour - locomotion
* Parallel prance as intermale behaviour
* Chase as either intermale behaviour or as play
* Fleeing in response to a threat or unfamiliar stimulus - stampede

Why is this of interest? If we can learn the intricacies of horse-horse following and horse-human following, it could improve the training of horses. How is movement initiated when horse follows horse? When horses follow and mirror the speed and direction of humans, does the horse think that the human is another horse? Is this imprinting or is it learned?

Mandy and Steve are working on HABIT - the Horse Automated Behaviour Identification Tool. This is considering the use of technology to automatically recognise horse behaviours. The goal is to automatically produce YouTube quality videos of automatic analysis of horse-horse and horse-human behaviours. From this it should be possible to asses equine behaviour from a welfare perspective and answer the questions, "Are horse interacting with humans as if they were other horses?" and "Are horse in training behaving 'normally'?" From here the programme aims to inform, increase people's knowledge base and aid training. There is a focus on low stress handling, welfare and safety and a consideration for species interactions.

There are five bedrocks of HABIT

1.Know your species. Where did it come from originally? How did it evolve? How was it domesticated? What is its social life like?
2.Sensory capabilities. How do they view the world? Humans and horses see colour differently because humans are tri-chromatic but horses are only b-chromatic. Horses also have very mobile ears
3.Communication. Reading body language - what do these expressions mean?
4.Our verbal and body language. What's in a name? Our words can make a difference in how others interact with a horse
5.Consider the individual, both nature and nurture

There are many breeds of horse

Using computer vision and machine learning, the system performs video based behaviour identification. It features helper apps that provide a smooth workflow and which processes longer videos into shorter clips ready for analysis by the main system. Computerised tracking and reliability is difficult in the field, as is automatically identifying different horses.

Computer vision can be inflexible. Real time processing can also cause some issues compared to retrospective processing. Some simple behaviours can be processed in real time but more complex behaviours need to be processed. Longer videos are processed into short ones by first identifying segments that contain horses. The video is then summarised in a similar way to instant highlights in sport. The hardest thing to do is to identify those sections that contain horse action and this happens frame by frame using Haar Cascades.

Haar Cascades were invented by Viola and Jones in 2002, named after Alfred Haar for his work in the 20th century on wavelets. It's a machine learning approach where software is trained from many positive and negative images and then used to detect objects in other images. It combines increasingly more complex classifiers into a cascade. It's used for face recognition, finger print recognition and number plate detection on motorways.

HAAR like features used in image processing

To train the system, the computer moves each member of a set of graphical shapes, called features, across the test image at different scales and orientations. Each of these features consists of contrasting regions of black and white rectangles. At each position, the code checks if the image contains a similar range of contrast to the current feature. The best features in a specific position, scale, etc are retained as useful classifiers. The best classifiers are separated in ever more complex stages, these sequential stages are the cascade. A test image can be rejected at an early stage, using a small number of classifiers, thus saving computing power.

For an efficient detector for HABIT, there needs to be unique features of horses that are readily identifiable and visible from multiple viewpoints. The horse "ear detector" has proven to be quite efficient and when this is combined with detectors for "legs" and "side view", reliability increases.

The Habit Ear Detector, detecting ears.

Next, we need to analyse the clips for behaviours. In the field of computer vision, this is sometimes called action spotting. Firstly, you train a classifier to decide if a behaviour is present in the test video clip. Then you repeat for all horse behaviours, of which there are lots. Then you can test a video clip with all of the classifiers and report one or more behaviours identified. To train the classifier, you have to extract key frames to build up a bag of visual words. From here histograms are built that enable you to identify examples of the behaviour that you're looking for.

The next stages of the research are continuing the development of the HABIT system, especially the behaviour identification module. Then work needs to be done on collecting a video of specific behaviours for training and testing. From there, it might be possible to start applying HABIT-like approaches to behaviour identification in other species.

The Public Lecture Series returns on the 20th of April at 6pm where Professor Philip Moriarty will talk about When the Quantum Uncertainty Principle Goes Up to 11. For more information, visit the Public Lecture Series website: http://www.nottingham.ac.uk/physics/outreach/science-public-lectures.aspx

Image Sources
All via Gav Squires

Talk : Visual illusions reveal that the world is different from what we think

Following on from last year's success, the Nottinghamshire branch of the British Science Association again put on a series of talks at Science in the Park 2017, held at Wollaton Hall. Professor Peter Mitchell from the University of Nottingham gives a talk on "Our eyes deceive us: visual illusions reveal that the world is different from what we think". @Gav Squires was there and has kindly written this guest post summarising the event, with some linkage added by NSB.

How do we mis-perceive that world? The was that we see the world is inaccurate and this is demonstrated in the drawings that we produce of it. However, some people do see the world in a more accurate way and they are able to better represent what's actually there.

Drawing has always been a core human activity. Even as far back as 30,000 years ago, humans were producing art on the walls of caves. Their knowledge of the world influence what they drew. By the Renaissance, artists had learned the laws of perspective by creating an invisible eye line. This enabled the three dimensional world to be represent on a two dimensional surface. The way that we draw the world is influence by the way that we see the world.

Cave Art

When drawing something that we've seen in a photograph, we are guilty of "boundary extension" - putting in details that are outside the frame of the photo. We extrapolate from what we've actually seen. Is this because we want to draw complete object? No, even in the case where there are no cropped items in the photograph, we will still extend the boundary. This is because of our inherent knowledge of the world - we know that there is more than just what is in the photograph.

Despite the invention of perspective, we have difficulty depicting three dimensions. For example, if we are drawing an object from a photograph that we know have 90 degree angles, then we will depict them as such even if they don't appear to be 90 degrees in the photograph. Our knowledge is contaminating our perception. Even someone like Raphael was guilty of this. We default to our knowledge.

What about the drawings of children? These tend to focus on what children find important so when they are drawing a car, they will make a big deal of the boot as that's where they put their toys on journeys, for example. However, there is an example of a schoolchild of 11 drawing the reading room at the British Library. He only looked at the scene for ten minutes and took neither notes nor sketches but drew the whole thing from memory. He had autism, which explains why he could see the world more accurately and with more objectivity. He even drew the inside of the dome with correct perspective, which is incredibly difficult to do.

Library Drawing

If we look at visual illusions, they reveal how we mis-perceive the world. The devil's triangle appears to be an impossible shape because of the way that we perceive 3D cues. The Shepard's table illusion shows two tables that appear to be different sizes but are, in fact, the same. People with autism are fooled less by this illusion that people without.

Visual Illusions

Shepard Illusion

A lot of time and effort has gone into finding out what is "wrong" with autistic people and trying to "fix" them. However, they also have strengths. We should be looking to build on them and help them achieve their potential.

Image Sources
All via Gav Squires

Talk - Photobiology - Effects of UV Radiation on Normal Skin

Graham Harrison formerly of Photobiology Dept at St John's Institute of Dermatology, King's College London and now of the University of Nottingham comes to Café Sci to talk about Photobiology - Effects of UV Radiation on Normal Skin. @Gav Squires was there and has kindly written this guest post summarising the event, with some linkage added by NSB.

Visible light has a wavelength between 400 and 700 nanometers. Around 1000 nanometers, you're into the infrared while down at 100 nanometers, you're into the ultraviolet. The shorter the wavelength, the more energy it contains.

There are three types of ultraviolet radiation - UVA(longer wavelength), UVB and UVC(shorter wavelength). All of the UVC in sunlight is blocked by the atmosphere. Only 5% of the light that reaches the earth is ultraviolet and only 5% of that is UVB. UVA penetrates much deeper into the skin but UVB is responsible for 80% of sunburn.

In fact, UVB is at least 1000 more powerful than UVA when it comes to causing sunburn. While UVB is also responsible for the production of vitamin D, as the ozone thins there is more of it coming through the atmosphere.

We can measure the UV radiation using a radiometer. A broad band one is handheld while a more accurate spectroradiometer costs around £30,000. On the other hand, you can use a biological method and examine skin for levels of sunburn. This is done by examining the Minimum Erythema Dose (MED) - the point at which the skin starts to burn. This MED will change depending on the skin type. There are six skin types in all, ranging from Type-I (white), which has a high risk of sunburn and cancer to Type-VI (black), which has a low risk of both.

Skin Types and their reaction to UV

In all of the interactions between UV and skin, photochemistry precedes photobiology. The sunlight is absorbed by a molecule and its energy changes the molecule. This leads to a multitude of effects from tanning to sunburn to cell death to vitamin D photosynthesis. When the UV reaches the DNA, it causes photodamage. Then it binds to the DNA and can cause a mutation. It's possible to stain for the anti-bodies that are evidence of this damage. There was a time when you would have to do a biopsy to look at the scale of the damage but now it's possible to measure the excretion products in urine.

Photoageing is caused when the tissue is damaged by sun exposure. It's actually damage to the collagen in the skin and is called solar elastosis. It is thought to be a UVA effect. DNA damage is also responsible for tanning. This happens when the pigment producing cells (melanocytes) in the skin are activated. Of course, the more serious outcome is skin cancer. The UV goes into the skin and causes a mutation where the DNA is repaired erroneously. The P53 gene usually stops tumours but if this is mutated you can get abnormal cell growth(dysplasia), then immunosuppression and this can lead to cancer. However, there are a number of factors can play a part in cancer forming, including physical environment, behavioural causes, non-behavioural causes and any prevention measures taken. With skin cancer, melanomas are only around 10% of the total skin cancers but they are the ones that kill you.

The P53 Protein
As well as humans, dolphins can get sunburnt. UV radiation can also damage your eyes, it leads to cataracts. Glass protects against UVB so glasses wearers are partly protected but you can still get a tan standing in a greenhouse. Plastic meanwhile will block all UV radiation. Sand on the other hand, reflects all UV and this is why you can get sunburnt particularly badly at the beach.

UV radiation concentration is greatest at noon as the sunlight has to get through less of the atmosphere. There is also much more UV radiation in the summer. Although you do need to be careful because even on a cloudy day, there is UV damage happening to the skin. Most indoor workers get 50% of their annual UV exposure over a span of just 33 days. This usually includes their summer holiday.

Sunscreens are specifically designed to stop sunburn rather than any of the other effects of UV such as ageing. Hence they are only interested in stopping the UVB. However they are generally not used as they should be. The recommended thickness is 2mg/cm2 of skin. This would require 32g of sunscreen to cover a woman's body and 38g to cover a man's. Since you are supposed to re-apply every three hours, your bottle isn't going to last very long and it's going to get very expensive very quickly.

But what does the Sun Protection Factor(SPF) on a sunscreen actually mean? Well, if you could usually spend 20 minutes in the sun before burning then SPF6 would allow you to spend 6 times as long, 120 minutes, in the sun before you burnt. However, these tests are based on thick applications, which isn't how people use it. However, you will still get some benefit from it and even SPF2 blocks 50% of the light. SPF4 blocks 75% and SPF50 blocks 99%, which is why you can't get a higher SPF than 50. Sunscreen is also tested with a very artificial sunlight - equivalent to sunlight at the top of a mountain at the equator.

Titanium Dioxide, a popular suncreen

But the sun isn't all bad. As well as vitamin D creation, there is a feelgood factor from UV radiation.

Café Sci returns to The Vat & Fiddle on April the 10th at 8pm when Dr Marcos Alcocer will talk on Food Allergies - What Are They And Why Do We Have Them? For more information, visit the Café Sci MeetUp page: https://www.meetup.com/nottingham-culture-cafe-sci/

Image Sources
P53, Tiox, Skin Types via Gav Squires.

Tuesday, 28 March 2017

Talk - Gravitational Waves and Black Holes

Dr Thomas Sotiriou from the University of Nottingham recently gave a Café Sci (or Café Scientifique et Cultural to give it its full name) talk on Gravitational Waves and Black Holes - Einstein's Amazing Legacy. @Gav Squires was there and has kindly written this guest post summarising the event, with some linkage added by NSB.

Dr Sotiriou began by describing how scientific theories are replaced with better ones, starting with Newton's law of universal gravitation, which describes the gravitational forces between two bodies in terms of their masses and the distance between them - multiplied by a factor called the Gravitational Constant.

Newton's law of universal gravitation

Gravity doesn't just attract things, it determines how objects move in space. In Newton's time his theory unified how we understood gravity both on the scale of the solar system and also how it works on Earth. It was a theory that proved useful for 200 years. Then, in the 19th century, it was observed that the planet Mercury didn't really obey this theory. Its orbit was very slightly different to what was predicted but this didn't really concern anybody. At this time the outermost planet that had been discovered was Uranus and its orbit didn't match Newton's theory either. The observed orbit hinted that there was another planet that was affecting it - this is how Neptune was discovered. It was then thought that something similar must be happening to Mercury and so an innermost planet called Vulcan was predicted. In reality, it was Newton's theory that was incorrect.

Dr Thomas Sotiriou, with visual aid

Einstein was very interested in light (his Nobel prize was for the discovery of the photoelectric effect). At the start of the 20th century it was known that observers moving at different speeds who are measuring the speed of light get the same value. This is counter-intuitive - if you're running straight at the light then surely you'd get a different speed. Einstein knew that the only way to explain this was that people moving at different speeds must have a different view of time and distance. This was the basis for his theory of special relativity. Einstein realised that space and time were independent, this is where his idea of spacetime came from. To pin down an event you need to know where and when it happened. This revolutionised the way that people thought about physics. The theory of electromagnetism worked really well with special relativity but Newton's theory of gravity did not.

Special relativity only relates to observes moving at constant speed. Einstein knew that to say something about observers that were accelerating, he would have to say something about gravity. For 10 years, he tried to formulate a theory that included both accelerating observers and gravity. The result was his theory of general relativity and it explains how matter curves spacetime. If we know what the matter distribution is then we know how spacetime will curve and this curvature tells matter how to move. This theory accounted for the deviations in Mercury's orbit.

This didn't impress scientists, they wanted a prediction for some unknown thing that existed only in the theory. Einstein predicted the bending of light rays and a year after the theory was published Eddington proved it during an eclipse. This was not the only ground-breaking prediction. Special relativity told us that nothing could travel faster than light and general relativity showed that light is affected by gravity. If light feels this pull and has finite speed then if there was something of huge mass in a very small space not even light could escape its pull. This is what we call a black hole and was predicted by general relativity. People didn't believe it for a long time.

The day light was shown to be affected by gravity

What happens when objects move around in space time? When a boat moves in water in causes ripples - the same thing happens in spacetime and this is where we get gravitational waves. This emits energy and this loss of energy causes objects to get closer together. This is happening with the Earth and the sun but it would take billions of years for the Earth to plunge into the sun. These emissions of energy are very small but when you come to black holes, the gravitational waves are much larger. It took four decades to develop the technology required to detect gravitational waves. The LIGO detector discovered the gravitational waves caused by the collision of two black holes. The energy emitted from the collision was more than the energy from all of the stars in the universe at that moment. Even so, the movement that LIGO detected was the size of an atom over 4km.

The LIGO Black Hole collision

Unlike with Newton's theory, general relativity has nothing to do with mass or forces - this is why it works with photons. While we know that energy and mass are related (E=MC2) but we don't need mass to have energy - photons have kinetic energy. It is actually energy that causes the curvature of spacetime. The famous equation E=MC2 actually only relates to mass at rest.

General relativity is better than Newton's theory but could we eventually have an even better one? Are dark energy and dark matter the equivalent of the procession of Mercury for general relativity? General relativity isn't a quantum theory so it's possible that at some point we will get a new theory of gravity or maybe even a new theory of matter.

Café Sci returns to The Vat & Fiddle on the 13th of March at 8pm where Graham Harrison from the University of Nottingham will talk on Photobiology - Effects Of UV Radiation On Normal Skin. For more information check out the MeetUp site: https://www.meetup.com/nottingham-culture-cafe-sci/